Bring Your Own Data

Our standard analysis pipelines can be run on data generated at other centres. Illumina sequence data (fastq format) generated from the appropriate library types can be processed through our Whole Genome, Whole Transcriptome or Whole Exome analysis workflows. Aligned sequence (bam format) can also be reanalyzed by back-extraction to fastq format. Deliverables include all standard workflow outputs that are included in our RUO Standard Pipelines.

Please contact gsi@oicr.on.ca if you have any questions or concerns.

Service Requests

Please select the pipeline for your desired project(s).

WGTS Pipeline (snvs/indels, copy number, structural variants, expression data and gene fusions)

For each case, this requires sequence data from Whole Genome libraries (tumour + matched normal), and Whole Transcriptome (tumour only)

WGS or WES Somatic Calling Pipeline (somatic snvs and copy number, structural variants only from WG libraries)

For each cases, this requires sequence data from Whole Genome or Whole Exome libraries (tumour + matched normal)

WGS or WES Tumour only (snvs and indels) Requires sequence data generated from tumour libraries

WTS Pipeline (expression + fusions) Requires sequence data from Whole transcriptome libraries

WGS or WES Germline Pipeline (snvs and indels)Requires sequence data from WGS or WES libraries

Injection

Project Setup

Price:

Initial Injection

Price:

Follow-up injections will be an additional $100.00 + additional sample costs

Assay Type(Required)

WGTS Pipeline

WGS or WES Somatic Calling Pipeline

WGS or WES Tumor Only

WTS Pipeline

WGS or WES Germline Pipeline

Samples

WGTS Pipeline

Whole Genome Transcriptome Sequencing

Price: $ 80.00 CAD

Tumour (WG + WT) + matched Normal (WG)

WGS or WES Somatic Calling Pipeline

Whole Genome Sequencing somatic

Price: $ 60.00 CAD

Tumour + matched Normal

Whole Exome Sequencing Somatic

Price: $ 25.00 CAD

Tumour + matched Normal

WGS or WES Tumour only

Whole Genome Sequencing Tumour Only

Price: $ 40.00 CAD

Single Sample

Whole Exome Sequencing Tumour Only

Price: $ 25.00 CAD

Single Sample

WTS Pipeline

Whole Transcriptome Sequencing

Price: $ 30.00 CAD

Single Sample

WGS or WES Germline Pipeline

Whole Genome Sequencing Germline gVCF

Price: $ 40.00 CAD

Per case

Whole Exome Sequencing Germline gVCF

Price: $ 25.00 CAD

Per case

Germline Joint Genotyping

Price: $ 50.00 CAD

Per batch

Project Description

Project Name(Required)

Basic Project Description(Required)

Contact and Billing Information

Principle Investigator Name(Required)

First Last

Principle Investigator Email(Required)

Main Contact Name(Required)

First Last

Main Contact Email(Required)

Billing Address(Required)

Street Address Address Line 2 City State / Province / Region ZIP / Postal Code Country

Subtotal

$ 0.00 CAD

Tax

$ 0.00 CAD

Total